Pavel P. Kuksa

Home

Software

Alignment-free Analysis and Prediction for DNA Barcode data
 
Project page (data+code)
String kernels in C
Mismatch, spectrum, gapped, wildcard string kernels
Project page (data+code)
Multi-class protein fold recognition
 
Project page (data+code)
Spatial kernels in C (SSSK)
 
Project page (data+code)
Sparse Spatial Kernels for Efficient Large Scale Sequence Classification
 
Project page (data+code)
High-throughput Annotation of Modified Ribonucleotides
 
Github project
Multi-variate sequence kernels
 
Code
Motif finding for large-alphabet inputs
 
Code

Paper

Databases

DASHR: Human non-coding RNA database Website